% Preprint metadata checked against bioRxiv and Crossref on 2026-09-30.
% All authors are included here; the longest author list is shortened on the page.
% Manuscript titles, screenshot author order, and review statuses supplied by
% Shayan Hajhashemi on 2026-09-30. Nanobody author order confirmed by the author.
% RORgamma preprint metadata checked against bioRxiv and Crossref on 2026-10-07.
% Title-withheld conference submissions are listed on the page, not exported here.

@misc{dhopareedoomah2026rorgamma,
  title = {{ROR$\gamma$ Inverse Agonism Redirects Tumour-Conditioned Emergency Myelopoiesis and Attenuates Established Tumour Progression}},
  author = {Dhoparee-Doomah, Iqraa and Ma, Kim and Brassard, Ariane and Leo, Sabrina and Hajhashemi, Shayan and Li, Yichen and Milne, Katy and Xu, Ming Zi and Al Dow, Manal and Fouda, Ahmed and Bourdeau, France and Gordon, Benjamin and Giannias, Betty and Nelson, Brad and Spicer, Jonathan and Ferri, Lorenzo and Tchervenkov, Jean and Cools-Lartigue, Jonathan},
  year = {2026},
  month = oct,
  date = {2026-10-07},
  publisher = {bioRxiv},
  note = {Preprint, version 1},
  doi = {10.64898/2026.10.01.755741},
  url = {https://www.biorxiv.org/content/10.64898/2026.10.01.755741v1}
}

@unpublished{lemaireQSPbiomarkers,
  title = {{Explainability analysis of QSP-derived virtual populations identifies robust pre-treatment biomarkers of immunotherapy}},
  author = {Lemaire, Vincent and Hajhashemi, Shayan and Rotte, Anand and Seyed-Ahmadi, Arman and Tripathi, Shubham and Chanu, Pascal and Wu, Benjamin and Li, Chunze and Ramanujan, Saroja and Gadkar, Kapil and Jin, Jin},
  note = {Manuscript under review at npj Precision Oncology}
}

@misc{dhopareedoomah2026immune,
  title = {{A Measurable Systemic Immune Phenotype Links Circulating Myeloid Dysfunction to Tumour Spatial Organization in Gastroesophageal Adenocarcinoma}},
  author = {Dhoparee-Doomah, Iqraa and Li, Yichen and Al Dow, Manal and Hajhashemi, Shayan and Brassard, Ariane and Benizri, Nissim and Leo, Sabrina and Milne, Katy and Xu, Ming Zi and Qiu, Qian and Nelson, Brad H. and Fiset, Pierre-Olivier and Giannias, Betty and Bourdeau, France and Spicer, Jonathan and Ferri, Lorenzo and Tchervenkov, Jean and Ma, Kim and Cools-Lartigue, Jonathan},
  year = {2026},
  month = sep,
  date = {2026-09-18},
  publisher = {bioRxiv},
  note = {Preprint, version 1},
  doi = {10.64898/2026.09.17.752366},
  url = {https://www.biorxiv.org/content/10.64898/2026.09.17.752366v1}
}

@misc{hajhashemi2026diffdose,
  title = {{DiffDose: Differentiable Programming for Personalized Dose-Regimen Optimal Control}},
  author = {Hajhashemi, Shayan and Emad, Amin and Craig, Morgan},
  year = {2026},
  month = sep,
  date = {2026-09-13},
  publisher = {bioRxiv},
  note = {Preprint, version 1; under review at npj Systems Biology and Applications},
  doi = {10.64898/2026.09.07.749974},
  url = {https://www.biorxiv.org/content/10.64898/2026.09.07.749974v1}
}

@misc{poursina2026latentspace,
  title = {{A Latent Space Thermodynamic Model of Cell Differentiation}},
  author = {Poursina, Ali and Hajhashemi, Shayan and Mikaeili Namini, Arsham and Saberi, Ali and Emad, Amin and Najafabadi, Hamed S.},
  year = {2026},
  month = mar,
  date = {2026-03-06},
  publisher = {bioRxiv},
  note = {Preprint, version 1},
  doi = {10.64898/2026.03.04.709512},
  url = {https://www.biorxiv.org/content/10.64898/2026.03.04.709512v1}
}

@unpublished{roche2020nanobody,
  title = {{Nanobody administration of Cas9 improves nuclear localization and HDR-enhanced synthetic lethality in A549 lung carcinoma}},
  author = {Roche, Philip and Hajhashemi, Shayan and Akavia, Uri David},
  year = {2020},
  note = {Manuscript withdrawn for intellectual property reasons}
}