Publications

Explainability analysis of QSP-derived virtual populations identifies robust pre-treatment biomarkers of immunotherapy

Vincent Lemaire, Shayan Hajhashemi, Anand Rotte, Arman Seyed-Ahmadi, Shubham Tripathi, Pascal Chanu, Benjamin Wu, Chunze Li, Saroja Ramanujan, Kapil Gadkar, Jin Jin.

Manuscript · Under review at npj Precision Oncology

DiffDose: Differentiable Programming for Personalized Dose-Regimen Optimal Control

Shayan Hajhashemi, Amin Emad, Morgan Craig.

bioRxiv · Preprint · September 13, 2026 · DOI · Code

Under review at npj Systems Biology and Applications

A Latent Space Thermodynamic Model of Cell Differentiation

Ali Poursina, Shayan Hajhashemi, Arsham Mikaeili Namini, Ali Saberi, Amin Emad, Hamed S. Najafabadi.

bioRxiv · Preprint · March 6, 2026 · DOI · Code

Nanobody administration of Cas9 improves nuclear localization and HDR-enhanced synthetic lethality in A549 lung carcinoma.

Philip Roche, Shayan Hajhashemi, Uri David Akavia.

Manuscript · 2020 · Withdrawn for intellectual property reasons · Jenthera Therapeutics

AISTATS 2027 submission

Shayan Hajhashemi, Cedrique Shum-Tim, Morgan Craig, Amin Emad.

Under review · Title withheld during anonymous review

ICLR 2027 submission

Shayan Hajhashemi, Cedrique Shum-Tim, Satya Prakash, Amin Emad.

Under review · Title withheld during anonymous review